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1. Bacformer Bacformer Public

   Modeling whole bacterial genome as a sequence of proteins.

   Python 86 15

2. BacBench BacBench Public

   Multi-scale and multi-task benchmark for evaluating ML models for bacterial genomics across the bacterial tree of life.

   Python 15 4

3. GeneBac GeneBac Public

   GeneBac: a modular framework for predicting antibiotic resistance from DNA sequence.

   Python 16 2

4. scBasset-pytorch scBasset-pytorch Public

   An implementation of scBasset model in PyTorch.

   Python 1